Basic papers
These are some of the basic references for real space pseudopotential code (PARSEC) and the electronic structure problem:
J. R. Chelikowsky, N. Troullier, and Y. Saad, Finite-difference-pseudopotential method: Electronic structure calculations without a basis, Phys. Rev. Lett. 72, 1240 (1994).
J. R. Chelikowsky, The pseudopotential-density functional method applied to nanostructures, J. of Phys. D 33, R33 (2000).
M. M. G. Alemany, M. Jain, L. Kronik, and J. R. Chelikowsky, Real-space pseudopotential method for computing the electronic properties of periodic systems, Phys. Rev. B 69, 075101 (2004).
L. Kronik, A. Makmal, M.L. Tiago, M.M.G. Alemany, M. Jain, X. Huang, Y. Saad, and J.R. Chelikowsky, PARSEC-the pseudopotential algorithm for real-space electronic structure calculations: Recent Advances and novel applications to nano-structures, physica status solidi (b) 243, 1063 (2006).
Y. Saad, J.R. Chelikowsky and S.M. Shontz, Numerical methods for electronic structure calculations of materials, SIAM Rev. 52, 3 (2010).
Algorithms and Recent Additions
These papers concern algorithm development and recent additions to PARSEC:
Y.K. Zhou, Y. Saad, M.L. Tiago, and J.R. Chelikowsky, Parallel self-consistent-field calculations via Chebyshev-filtered subspace acceleration, Phys. Rev. E 74, 066704 (2006).
Y.K. Zhou, Y. Saad, M.L. Tiago, J.R. Chelikowsky, Self-consistent-field calculations using Chebyshev-filtered subspace iteration, J. Comp. Phys. 219, 172 (2006).
A. Sitt, L. Kronik, S. Ismail-Beigi, and J. R. Chelikowsky, Excited state forces within time-dependent density functional theory: a frequency domain approach, Phys. Rev. A, 76, 054501 (2007).
D. Naveh, L. Kronik, M. L. Tiago, and J. R. Chelikowsky, Real-Space Pseudopotential method for Spin-Orbit Coupling within Density Functional Theory, Phys. Rev. B 76, 153407 (2007).
A. Natan, A. Benjamini, D. Naveh, L. Kronik, M. L. Tiago, S. P. Beckman, and J. R. Chelikowsky, Real-space pseudopotential method for first principles calculations of general periodic and partially periodic systems, Phys. Rev. B 78, 075109 (2008).
D. Naveh and L. Kronik, Real-Space Pseudopotential method for Noncollinear Magnetism within Density Functional Theory, Solid State Comm. 149, 177 (2009).
G. Schofield, J.R. Chelikowsky, and Y. Saad, A spectrum slicing method for the Kohn-Sham problem, Comp. Phys. Commun. 183, 497 (2012).
Y. Zhou, J.R. Chelikowsky and Y. Saad: Chebyshev-filtered subspace iteration method free of sparse diagonalization for solutions of the Kohn-Sham equation, J. of Comp. Phys. 274, 770 (2014).
Y. Zhou, J.R. Chelikowsky, X. Gao and A. Zhou: On the preconditioning'' function used in plane-wave DFT calculations and its generalization, Commun. in Comput. Phys. 18, 167 (2015).
N.S. Bobbitt, G. Schofield, C. Lena, and J.R. Chelikowsky: High Order Forces and Nonlocal Operators in a Kohn-Sham Hamiltonian, Phys. Chem. Chem. Phys. 17, 31542 (2015).
L-BFGS
These are references for the limited-memory BFGS algorithm:
R. H. Byrd, P. Lu and J. Nocedal, A Limited Memory Algorithm for Bound Constrained Optimization, SIAM Journal on Scientific and Statistical Computing 16, 1190 (1995).
C. Zhu, R. H. Byrd and J. Nocedal, L-BFGS-B: Algorithm 778: L-BFGS-B, FORTRAN routines for large scale bound constrained optimization, ACM Transactions on Mathematical Software 23, 550 (1997).
Recent Publications
This is a short list of relevant papers that use this real-space method:
- L. Gao, J. Souto-Casares, J.R. Chelikowsky and A.A. Demkov: "Orientation dependence of the work function: metal nanocrystals,'' J. Chem. Phys. 147, 214301 (2017).
- N.S. Bobbitt and J.R. Chelikowsky: "First-principles study of vibrational properties and Raman spectra in Li-doped Si nanocrystals,'' Chem. Phys. Lett. 646, 136 (2016).
- T.-L. Chan, A.J. Lee, and J.R. Chelikowsky: "Ionization of a P-doped Si(111) nanofilm using two dimensional periodic boundary conditions," Phys. Rev. B 91, 235445 (2015).
- Y. Sakai, A.J. Lee and J.R. Chelikowsky: "First-principles non-contact atomic force microscopy image simulations with frozen density embedding theory,'' Nano Lett. 16, 3242 (2016).
- T.-L. Chan, J. Souto-Casares J. R. Chelikowsky, K.-M. Ho, C.-Z. Wang, and S. Zhang: "The effect of interface on quantum confinement and electronic structure across the Pb/Si(111) junction,'' Solid State Comm. 217, 43 (2015).
- T.-L. Chan, A. Lee and J.R. Chelikowsky: "An effective capacitance model for computing the electronic properties of charged defects in crystals,'' Comp. Phys. Comm. 185, 1564 (2014).
- A.J. Lee, T.-L. Chan and J.R. Chelikowsky: "Dopant binding energies in P-doped Ge[110] nanowires using real-space pseudopotentials,'' Phys. Rev. B 89, 075419 (2014).
- A.J. Lee, M. Kim, C. Lena and J.R. Chelikowsky: "Mechanical and electronic properties of strained Ge nanowires using ab initio real-space pseudopotentials,'' Phys. Rev. B 86, 115331 (2012).
- J.R. Chelikowsky, T.-L. Chan, M.M.G Alemany and G. Dalpian: "Computational studies of doped nanostructures,'' Rep. Prog. Phys. 74, 046501 (2011).
- L. Tortajada, L. V. Besteiro, M. L. Tiago, L. J. Gallego, J. R. Chelikowsky, and M. M. G. Alemany: "Multidimensional nanoscale materials from fused quantum dots,'' Phys. Rev. B 84, 205326 (2011).
- K. H. Khoo, J. T. Arantes, J. R. Chelikowsky, and G. M. Dalpian: "First-Principles Calculations of Lattice-Strained Core-Shell Nanocrystals," Physical Review B 84, 075311 (2011).
- T.-L. Chan, J. R. Chelikowsky and S. B. Zhang: " An effective one-particle theory for formation energies in doping Si nanostructures,'' Appl. Phys. Lett. 98, 133116 (2011).
- J.R. Chelikowsky, T.-L. Chan, M.M.G Alemany and G. Dalpian: "Computational studies of doped nanostructures,'' Rep. Prog. Phys. 74, 046501 (2011).
- J.R. Chelikowsky: "Tools for Predicting Nanomaterial Properties,'' Handbook of Nanophysics 1 , K. Sattler, editor in chief. (Taylor and Francis, Boca Raton, 2011), p.3-1.
- I. Vasliev and J.R. Chelikowsky: "Real-space calculations of atomic and molecular polarizabilities using asymptotically correct exchange-correlation potentials,'' Phys. Rev. A 81, 012502 (2010).
- J. Han, T.-L. Chan and J. R. Chelikowsky: "Quantum confinement, core level shifts, and dopant segregation in P-doped Si <110> nanowires," Phys. Rev. B 82, 153413 (2010).
- Y. Saad, J.R. Chelikowsky and S. Shontz: “Numerical Methods for Electronic Structure Calculations of Materials,” SIAM Review, 52, 3 (2010).
- T.-L. Chan and J.R. Chelikowsky: “Controlling diffusion in semiconductor nanostructures by size and dimensionality,” Nano Letters 10, 821 (2010).
- J.-H. Eom, T.-L. Chan and J.R. Chelikowsky: “The role of vacancies on B doping in Si nanocrystals,” Solid State Commun. 150, 130 (2010).
- M. Lopez del Puerto, M. Jain, and J.R. Chelikowsky: “Time-dependent density functional theory calculation of the Stokes shift in hydrogenated silicon clusters,” Phys. Rev. B 81, 035309 (2010).
- H. Kwak and J.R. Chelikowsky: “Size-dependent Spin-polarization of Carbon-doped ZnO Nanocrystals,” Applied Phys. Lett. 95, 263108 (2009).
- L. V. Besteiro, L. Tortajada, M. L. Tiago, L.J. Gallego, J. R. Chelikowsky, and M. M. G. Alemany: “Efficient n-type doping of zinc-blende III-V semiconductor quantum dots,” Phys. Rev. B. 81, 121307 (2010).
- M. Tiago, J. C. Idrobo, S. Ogut J. Jellinek, and J. R. Chelikowsky: “Electronic and Optical Excitations in Ag_n (n=1-8) Clusters: Comparison of Density Functional and Many-Body Theories,”Phys. Rev. B 79, 155419 (2009).
- K.H. Khoo and J.R. Chelikowsky: “Theoretical Study of Electron Transport across Carbon Nanotube Junctions Decorated with Au Nanoparticles,” Phys. Rev. B 79, 205422 (2009).
- T.-L. Chan, A. T. Zayak, G. M. Dalpian, and J. R. Chelikowsky: “Role of Confinement on Diffusion Barriers in Semiconductor Nanocrystals,” Phys. Rev. Lett. 102, 025901 (2009).
- J.R. Chelikowsky, A. T. Zayak, T.-L. Chan, M. L. Tiago, Y. Zhou and Y. Saad: “Algorithms for the Electronic and Vibrational Properties of Nanocrystals,” J. Phys. Cond. Matter 21, 064207 (2009).
- H. Kwak, M.L. Tiago, T.-L. Chan, and J.R. Chelikowsky: “The Role of Quantum Confinement and Hyperfine Splitting in Li Doped ZnO Nanocrystals,'” Phys. Rev. B 78, 195324 (2008)
- M. M. G. Alemany, L. Tortajada, X. Huang, M.L. Tiago,L.J. Gallego, and J.R. Chelikowsky: “The role of dimensionality and quantum confinement in p-type semiconductor indium phosphide nanomaterials,” Phys. Rev. B 78, 233101 (2008).
- H. Kwak, M. L. Tiago and J. R. Chelikowsky: “Quantum Confinement and Strong Coulombic Correlation in ZnO Nanocrystals,” Solid State Commun. 145, 227 (2008).
- T.-L. Chan, M. L. Tiago, E. Kaxiras and J.R. Chelikowsky, “Size Limits on Doping Phosphorus into Silicon Nanocrystals,” Nano Letters 8, 596 (2008).
- M. Lopez del Puerto, M.L. Tiago, and J.R. Chelikowsky: “Ab initio methods for the optical properties of CdSe clusters,” Phys. Rev. B 77, 045404 (2008).
- L. Kong and J.R. Chelikowsky: “Transport properties of transition-metal-encapsulated Si cages,” Phys. Rev. B 77, 073401 (2008).
- A.T. Zayak, S. Beckman, M. Tiago, P. Entel, and J.R. Chelikowsky: “Switchable Heusler Clusters,” J. Appl. Phys. 104, 074307 (2008).
- M.M.G. Alemany, X. Huang, M. L. Tiago , L.J. Gallego, and J.R. Chelikowsky: “Ab initio calculations for p-type doped bulk indium phosphide,” Solid State Commun. 146, 245 (2008).
- N. Sai, M.L. Tiago, J.R. Chelikowsky, and F. A. Reboredo: “Optical spectra and exchange-correlation effects in molecular crystals,” Phys. Rev. B 77, 161306 (2008).
- A.T. Zayak, P. Entel, and J.R. Chelikowsky: “Minority spin polarization and surface magnetic enhancement in Heusler clusters,” Phys. Rev. B 77, 212401 (2008).
- H. Kwak, M.L. Tiago, T.-L. Chan and J.R. Chelikowsky: “Hyperfine splitting of partially ionized Li donors in ZnO nanocrystals,” Chem. Phys. Lett. 454, 337 (2008).
- A. Natan, A. Mor, D. Naveh, L. Kronik, M.L. Tiago, S.P. Beckman and J.R. Chelikowsky: “Real-space pseudopotential method for first principles calculations of general periodic and partially periodic systems,” Phys. Rev. B 78, 075109 (2008).
- J. Han, M. L. Tiago, T.-L. Chan, and J. R. Chelikowsky: “Real-Space First-Principles Method for the Electronic Structure of One Dimensional Periodic Systems,” J. Chem. Phys. 129, 144109 (2008).
- H. Kwak, M. L. Tiago and J. R. Chelikowsky: "Quantum Confinement and Strong Coulombic Correlation in ZnO Nanocrystals,'' Solid State Commun. 145, 227 (2008).
- M. Lopez del Puerto, M.L. Tiago, and J.R. Chelikowsky: "Ab initio methods for the optical properties of CdSe clusters,'' Phys. Rev. B 77, 045404 (2008).
- M.M.G. Alemany, X. Huang, M.L. Tiago, and J.R. Chelikowsky: "The Role of Quantum Confinement in p-Type Doped Indium Phosphide Nanowires,'' Nano Lett. 7, 1878 (2007).
- J.R. Chelikowsky, M.L. Tiago, Y. Saad, and Y. Zhou: "Algorithms for the Evolution of Electronic Properties in Nanocrystals,'' Comp. Phys. Comm. 177, 1 (2007).
- M.M.G. Alemany, M. Jain, M. L. Tiago, Y. Zhou, Y. Saad and J.R. Chelikowsky: "Efficient first principles calculations of the electronic structure of periodic systems,'' Comp. Phys. Commun. 177, 339 (2007).
- M. Lopez del Puerto, M.L. Tiago and J.R. Chelikowsky: "Ab initio calculation of temperature effects in the optical response of open-shell sodium clusters,'' J. Chem. Phys. 27, 144311 (2007).
- T.-L. Chan, M.L. Tiago and J.R. Chelikowsky: "Doping nanocrystals and the role of quantum confinement,'' Proceedings of the 2007 International Conference on Frontiers of Characterization and Metrology for Nanoelectronics, Editors: D. Seiler, A.C. Diebold, R. McDonald, C.M. Garner, D. Herr, R.P. Khosla and E.M. Secula, AIP Conf. Proc. 931, 555 (2007).
- A. Sitt, L. Kronik, S. Ismail-Beigi and J.R. Chelikowsky: "Excited state forces within time-dependent density functional theory: A real-space, frequency domain approach,'' Phys. Rev. A 76, 054501 (2007).
- L. Kong, J.R. Chelikowsky, J.B. Neaton, and S.G. Louie: "Real-space pseudopotential calculations of spin-dependent electron transport in quantum point contacts,'' Phys. Rev. B 76, 235422 (2007).
- D. Naveh, L. Kronik, M.L. Tiago and J.R. Chelikowsky: "Real-Space Pseudopotential method for Spin-Orbit Coupling within Density Functional Theory,'' Phys. Rev. B 76, 153407 (2007).
- M.M.G. Alemany, R. C. Longo, L. J.Gallego, D. J. Gonzalez, L.E. Gonzalez, M. L. Tiago and J.R. Chelikowsky: "Ab initio molecular dynamics simulations of the static, dynamic and electronic properties of liquid lead. A study based on a real-space implementation of density-functional theory," Phys. Rev. B 76, 214203 (2007).
- T.-L. Chan, M.L. Tiago, and J.R. Chelikowsky: "Algorithms for Defects in Nanostructures,'' Physica B 401-402, 531 (2007).
- S. Beckman and J.R. Chelikowsky: "The structure and properties of vacancies in Si nano-crystals calculated by real space pseudopotential methods,'' Physica B 401-402, 537 (2007).
- M.M.G. Alemany and J.R. Chelikowsky: "Ab initio calculations for the interconversion of optically active defects in amorphous silica,'' Phys. Rev. B 73, 235211 (2006).
- Y. Zhou, Y. Saad, M. L. Tiago and J. R. Chelikowsky: "Self-consistent-field calculations using Chebyshev-filtered subspace iteration,'' J. Comp. Phys. 219, 172 (2006).
- M.L. Tiago and J.R. Chelikowsky: "Optical excitations in organic molecules, clusters and defects from first principles Green's function methods,''Phys. Rev. B 73, 205334 (2006).
- L. Kronik, A. Makmal, M.L. Tiago, M.M.G. Alemany, M. Jain, X. Huang, Y. Saad and J.R. Chelikowsky: "PARSEC-the pseudopotential algorithm for real space electronic structure calculations: recent advances and novel applications to nano-structures,'' phys. stat. sol. (b) 243, 1063 (2006).
- G. Dalpian, M.L. Tiago, M. Lopez del Puerto and J.R. Chelikowsky: "Symmetry considerations for semiconductor nanocrystals,'' Nano Lett. 6, 501 (2006).
- L. Kong, M. L. Tiago and J. R. Chelikowsky: "Real-space pseudopotential method for electron transport properties of nano-scale junctions,'' Phys. Rev. B} 73, 195118 (2006).
- G. Dalpian and J.R. Chelikowsky: "Self-Purification in Semiconductor Nanocrystals,'' Phys. Rev. Lett. 96, 226802 (2006).
- S. Li, M.M.G. Alemany and J. R. Chelikowsky: "Real-space Ab initio pseudopotential calculations for anion clusters: Fen n=3-6,'' Phys. Rev. B 73, 233404 (2006).
- S. Li, M.M.G. Alemany and J. R. Chelikowsky: "Real space pseudopotential calculations for copper clusters,'' J. Chem. Phys. 125, 034311(2006).
- Y. Saad, Y. Zhou, C. Bekas and J.R. Chelikowsky: "Diagonalization Methods in PARSEC,'' phys. stat. sol. (b) 243, 2188 (2006).
- J.R. Chelikowsky, E. Kaxiras and R.M. Wentzcovitch: "Theory of Spintronic Materials,'' phys. stat. sol. (b) 243, 2133 (2006).
- M. Lopez del Puerto, M.L. Tiago, and J.R. Chelikowsky: "Excitonic effects and optical properties of passivated CdSe clusters,'' Phys. Rev. Lett. 97, 096401 (2006).
- M.L. Tiago and J.R. Chelikowsky: "Confinement effects in the optical properties of semiconductor nanocrystals,'' { phys. stat. sol. (b) 243, 2151 (2006).
- S. Beckman, J. Han, and J.R. Chelikowsky: "Role of Quantum Confinement in Ge Nanowires,'' Phys. Rev. B 74, 165314 (2006).
- M.L. Tiago, Y. Zhou, M.M.G. Alemany, Y. Saad, and J.R. Chelikowsky: "The Evolution of Magnetism in Iron from the Atom to the Bulk,'' Phys. Rev. Lett. 97, 147201 (2006).
- N.S. Norberg, G.M. Dalpian, J.R. Chelikowsky, and D.R. Gamelin: "Vacuum Pinning of Magnetic Impurity Levels in Quantum Confined Semiconductors,'' Nano Lett. 6, 2887 (2006).
- J.R. Chelikowsky: "The Role of Self-Purification and the Electronic Structure of Magnetically Doped Semiconductor Nanocrystals,'' Phase Transitions 79, 739 (2006).
- Y. Zhou, Y. Saad, M.L. Tiago, and J.R. Chelikowsky: "Parallel Self-Consistent-Field Calculations via Chebyshev-Filtered Subspace Acceleration,'' Phys. Rev. E 74, 066704 (2006).
- G. Nesher, L. Kronik and J.R. Chelikowsky: "Ab initio absorption spectra of Ge nanocrystals,'' Phys. Rev. B 71, 035344 (2005).
- X. Huang, E. Lindgren and J.R. Chelikowsky: "Surface passivation method for semiconductor nanostructures,'' Phys. Rev. B 71, 165328 (2005).
- S. Li, M.M.G. Alemany, and J.R. Chelikowsky: "Ab initio} calculations of the photoelectron spectra of transition metal clusters,'' Phys. Rev. B 71, 165433 (2005).
- X. Huang, A. Makmal, J. R. Chelikowsky and L. Kronik: "Size dependent spintronic properties of dilute magnetic semiconductor nanocrystals,'' Phys. Rev. Lett. 94, 236801 (2005).
- K.S. Nakayama, M.M.G. Alemany, H. Kwak, T. Sugano, K. Ohmori, J.R. Chelikowsky and J.H. Weaver: "Electronic structure of Si(001)-c(4x2) analyzed by scanning tunneling spectroscopy and ab initio simulations,'' Phys. Rev. B 73, 035330 (2006).
- M. Lopez del Puerto, M.L. Tiago, I. Vasiliev and J.R. Chelikowsky: "Real space pseudopotential calculations of the ground state and excited state properties of the water molecule,'' Phys. Rev. A 72, 052504 (2005).
- D.V. Melnikov and J.R. Chelikowsky: "Electron affinities and ionization energies of semiconductor nanocrystals,'' Phys. Rev. B 69, 113305 (2004).
- D.V. Melnikov and J.R. Chelikowsky: "Quantum confinement in phosphorus-doped silicon nanocrystals,'' Phys. Rev. Lett. 92, 046802 (2004).
- M.M.G. Alemany, M. Jain, J.R. Chelikowsky and L. Kronik: "A real space pseudopotential method for computing the electronic properties of periodic systems,'' Phys. Rev. B 69, 075101 (2004).
- S. Li, M.M.G. Alemany and J.R. Chelikowsky: "Ab initio} calculations for the photoelectron spectra of vanadium clusters,'' {\it J. Chem. Phys.} {\bf 121}, 5893 (2004).
- L. Kronik, M. Jain, and J.R. Chelikowsky: "Electronic structure and spin-polarization of MnGaP,'' Applied Phys. Lett. 85, 2014 (2004).
- S. Ogut and J.R. Chelikowsky: "Charge State Dependence Jahn-Teller Distortions of the E-center Defect in Crystalline Silicon,'' Phys. Rev. Lett. 91, 235503 (2003).
- W. R. Burdick, Y. Saad, L. Kronik, M. Jain, I. Vasiliev and J.R. Chelikowsky: "Parallel Implementation of Time-Dependent Density Functional Theory,'' Comp. Phys. Comm. 156, 22 (2003).
- D.V. Melnikov and J.R. Chelikowsky: "Ab Initio Absorption Spectra of Germanium Nanocrystals,'' Solid State Comm. 127, 361 (2003).
- M. C. Troparevsky, L. Kronik, and J.R. Chelikowsky: "Optical Excitations in CdSe Quantum Dots,'' J. Chem. Phys. 119, 2284 (2003).
- S. Ogut, R. Burdick, Y. Saad, and J.R. Chelikowsky: "Ab Initio Calculations for the Large Dielectric Matrices of Confined Systems,'' Phys. Rev. Lett. 90, 127401 (2003).
- L. Kronik, R. Fromherz, E. Ko, G. Gantefor, and J.R. Chelikowsky: "Photoemission spectra of deuterated silicon clusters: experiment and theory,'' Euro. Phys. J. D 24, 33 (2003).
- M.M.G. Alemany and James R. Chelikowsky: "Edge-sharing tetrahedra: Precursors of the E' defects in amorphous silica,'' Phys. Rev. B 68, 054206 (2003).
- I. Vasiliev, S. Ogut, and J. R. Chelikowsky: "First Principles Density Functional Calculations for Optical Spectra of Clusters and Nanocrystals,'' Phys. Rev. B 65, 115416 (2002).
- I. Vasiliev, R. M. Martin and J.R. Chelikowsky: "Effect of Surface Oxidation on the Optical Properties of Silicon Nanocrystals,'' Phys. Rev. B 65, 121302 (2002).
- M.C. Troparevsky, L. Kronik and J.R. Chelikowsky: "Ab initio Absorption Spectra of CdSe Clusters,'' Phys. Rev. B 65, 033311 (2002).
- L. Kronik, R. Fromherz, E. Ko, G. Gantef\"{o}r, and J. R. Chelikowsky: "Highest Electron Affinity as a Predictor of Cluster Anion Structure,'' Nature: Materials 1, 49 (2002).
- L. Kronik, I. Vasiliev and J.R. Chelikowsky: "Ab initio Calculations for Structure and Temperature Effects on the Polarizabilities of Nan n<20 Clusters,'' Phys. Rev. B} 62, 9992 (2000).
- L. Kronik, I. Vasiliev, M. Jain and J.R. Chelikowsky: "Ab Initio Structures and Polarizabilities of Sodium Custers," J. Chem. Phys. 115, 4322 (2001).
- I. Vasiliev, S. Ogut and J.R. Chelikowsky: "Optical Absorption and Electronic Excitations in Hydrogenated Silicon Clusters,'' MRS Symp. Proc. 579, 91 (2000).
- M. C. Troparevsky and J.R. Chelikowsky: "Structural and Electronic Properties of CdS and CdSe Clusters,'' J. Chem. Phys. 114, 943 (2001).
- I. Vasiliev, S. Ogut, and J.R. Chelikowsky: "Ab Initio} Optical Absorption and Electronic Excitations in Hydrogenated Silicon Quantum Dots,'' Phys. Rev. Lett.} 86, 1813 (2001).
- S. Ogut and J. R. Chelikowsky: "Ab Initio Investigation of Point Defects in Bulk Si and Ge Using a Cluster Method,'' Phys. Rev. B 64, 245206 (2001).
- I. Vasiliev, S. Ogut and J. R. Chelikowsky: "Ab initio Absorption Spectra of Gallium Arsenide Clusters,'' Phys. Rev. B 60, R8477 (1999).
- S. Ogut and J. R. Chelikowsky: `` Large Pairing Jahn-Teller Distortions Around Divacancies in Crystalline Silicon,'' Phys. Rev. Lett. 83, 3852 (1999).